Terms and related documentation from the Minimal Information about an Omics Protocol (MIOP) specification
These terms were developed by the Better Biomolecular Ocean Practices (BeBOP) group coming out of the Task Team 21-03: Omics/eDNA Protocol Management under the Ocean Best Practices System.
Please consult MIOP_definition.md for the term specifications
| MIOP Term | Definition | Example |
|---|---|---|
| methodology category | Methodology category which the uploaded protocol belongs to | society |
| project | Details about the project that generated this version of the protocol | Moorea BioCode, https://www.moorea.berkeley.edu/programs/research/moorea-biocode |
| purpose | Terms to describe the purpose of the omics research | time series design [OBI:0500020] |
| analyses | Terms to describe the types of analyses used in the protocol. | amplicon sequencing assay [OBI:0002767] |
| geographic location | Geographic location(s) in which the protocol has been used. | Monterey Bay [GAZ:00002509] |
| broad-scale environmental context | Biomes in which the protocol was successfully used. | oceanic epipelagic zone biome [ENVO:01000033] |
| local environmental context | Environmental features targeted using the protocol. | seasonal marine thermocline [ENVO:01000107] |
| environmental medium | Identify the environmental or organismal material from which the biological molecule (e.g., DNA/RNA/Protein) was extracted. | sea water [ENVO:00002149] |
| target | Identify the target taxa, gene and/or molecule for the protocol. | Polaribacter [NCBITaxon:1642819] |
| creator | An entity responsible for making the resource. | Raïssa Meyer, https://orcid.org/0000-0002-2996-719X |
| materials required | Terms to identify the key resources needed to complete the protocol. | Illumina MiSeq [EFO:0004205] |
| skills required | Description of expertise required to execute protocol. | molecular biologist with experience in PCR |
| time required | Number of minutes required to complete protocol | 10 |
| personnel required | Recommended number of people required to execute protocol. | 2 |
| language | A language of the resource. | en |
| issued | Date of formal issuance of the resource. | 2012-02-15 |
| audience | A class of agents for whom the resource is intended or useful. | scientists |
| publisher | An entity responsible for making the resource available. | Woods Hole Oceanographic Institution |
| hasVersion | A related resource that is a version, edition, or adaptation of the described resource. | 1.1.2 |
| license | A legal document giving official permission to do something with the resource. | Public Domain (CC0) |
| maturity level | Enter the maturity level of the methodology in the document. | Pilot |